For a detailed discussion of the networks and how they enumerated, please read our paper on arXiv.org:
All data files available here are ZIP archives of text files containing encoded Network strings. We describe the format in detail here:
The following table shows the number of networks for a given number of species and reactions. Click the number to download the file of networks. We will add more data in the table below as it becomes available.
|1 Reaction||2 Reactions||3 Reactions||4
|4 Species||1||274||19,335||796,303||24,159,763||Estimate: 4 months||Estimate: 2 years||24,975,676|
|5 Species||0||136||30,246||3,276,608||240,319,995 zip: 727 MB unzip: 17 GB||Estimate: 10 months||243,626,985|
|6 Species||0||29||21,913||5,651,388||Estimate: 10 months||Estimate: 47 Years||5,673,330|
|7 Species||0||3||8,526||5,0638,577||Estimate: 4-6 months||Estimate: 900 Years||5,077,106|
|8 Species||0||0||1,865||2,666,292||Estimate: 6-9 years||Estimate: 600 to 1000 years||2,668,157|
|9 Species||0||0||225||877,692||Insufficient Memory||877,917|
|10 Species||0||0||14||Insufficient Memory||14|
Source Code + Binaries
We developed the following software tools:
Network Enumeration – generates all possible nonisomorphic graphs that represent reaction networks for a given number of species and reactions.
Graph Support – programs for translating directed graphs into different network formats.
Copyright © 2009, Anastasia Deckard, Frank T Bergmann and Herbert M Sauro All rights reserved.
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