BIOMD0000000001.xml |
| Id | EPSP_Edelstein |
| Name | Edelstein1996_EPSP_AChEvent |
| Number of Floating Species: | 12 |
| HasEvents? | YES |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000002.xml |
| Id | mod |
| Name | Edelstein1996_EPSP_AChSpecies |
| Number of Floating Species: | 13 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000003.xml |
| Id | GMO |
| Name | Goldbeter1991_MinMitOscil |
| Number of Floating Species: | 3 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000004.xml |
| Id | GMO |
| Name | Goldbeter1991_MinMitOscil_ExplInact |
| Number of Floating Species: | 5 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000005.xml |
| Id | Tyson1991CellModel_6 |
| Name | Tyson1991_CellCycle_6var |
| Number of Floating Species: | 6 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac MathSBML Oscill8 Core SBToolbox2 |
Concentration Plot
Difference Plot
BIOMD0000000006.xml |
| Id | Tyson1991CellModel_2 |
| Name | Tyson1991_CellCycle_2var |
| Number of Floating Species: | 2 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi CVODE roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000007.xml |
| Id | NovakTyson1997CellModel |
| Name | Novak1997_CellCycle |
| Number of Floating Species: | 17 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000008.xml |
| Id | Gardner1998_CellCycle_Goldbeter |
| Name | Gardner1998_CellCycle_Goldbeter |
| Number of Floating Species: | 5 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000009.xml |
| Id | Huang1996_MAPK_ultrasens |
| Name | Huang1996_MAPK_ultrasens |
| Number of Floating Species: | 22 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000010.xml |
| Id | Kholodenko2000_MAPK_feedback |
| Name | Kholodenko2000_MAPK_feedback |
| Number of Floating Species: | 8 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000011.xml |
| Id | MAPK_in_Solution |
| Name | Levchenko2000_MAPK_noScaffold |
| Number of Floating Species: | 22 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi CVODE roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000012.xml |
| Id | repressilator |
| Name | Elowitz2000_Repressilator |
| Number of Floating Species: | 6 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000013.xml |
| Id | untitled |
| Name | Poolman2004_CalvinCycle |
| Number of Floating Species: | 18 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi CVODE roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 |
Concentration Plot
Difference Plot
BIOMD0000000014.xml |
| Id | MAPK_in_Scaffold |
| Name | Levchenko2000_MAPK_Scaffold |
| Number of Floating Species: | 86 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi CVODE roadRunner Jarnac jsim MathSBML SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000015.xml |
| Id | Curto |
| Name | Curto1998_purineMetabol |
| Number of Floating Species: | 16 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000016.xml |
| Id | Goldbeter1995 |
| Name | Goldbeter1995_CircClock |
| Number of Floating Species: | 6 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000017.xml |
| Id | Hoefnagel2002_PyruvateBranches |
| Name | Hoefnagel2002_PyruvateBranches |
| Number of Floating Species: | 12 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi CVODE roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000018.xml |
| Id | MorrisonAllegra |
| Name | Morrison1989_FolateCycle |
| Number of Floating Species: | 20 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000020.xml |
| Id | hhsa_1952 |
| Name | hodgkin-huxley squid-axon 1952 |
| Number of Floating Species: | 0 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner SBToolbox2 |
Concentration Plot
Difference Plot
BIOMD0000000021.xml |
| Id | Leloup1999_CircClock_periodic |
| Name | Leloup1999_CircClock |
| Number of Floating Species: | 10 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000022.xml |
| Id | Ueda2001_CircClock |
| Name | Ueda2001_CircClock |
| Number of Floating Species: | 10 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000023.xml |
| Id | Rohwer2001_Sucrose |
| Name | Rohwer2001_Sucrose |
| Number of Floating Species: | 5 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000024.xml |
| Id | Scheper1999 |
| Name | Scheper1999_CircClock |
| Number of Floating Species: | 2 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim Oscill8 Core |
Concentration Plot
Difference Plot
BIOMD0000000025.xml |
| Id | Smolen2002 |
| Name | Smolen2002_CircClock |
| Number of Floating Species: | 3 |
| HasEvents? | YES |
| HasRules? | NO |
| Simulators delivering results: | BioUML copasi roadRunner |
Concentration Plot
Difference Plot
BIOMD0000000026.xml |
| Id | Markevich2004_MAPK_orderedelementary |
| Name | Markevich2004_MAPK_orderedElementary |
| Number of Floating Species: | 11 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000027.xml |
| Id | Markevich2004_MAPK_orderedMM |
| Name | Markevich2004_MAPK_orderedMM |
| Number of Floating Species: | 5 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000028.xml |
| Id | model_0000001 |
| Name | Markevich2004_MAPK_phosphoRandomElementary |
| Number of Floating Species: | 16 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000029.xml |
| Id | model_0000001 |
| Name | Markevich2004_MAPK_phosphoRandomMM |
| Number of Floating Species: | 6 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000030.xml |
| Id | model_0000001 |
| Name | Markevich2005_MAPK_AllRandomElementary |
| Number of Floating Species: | 18 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000031.xml |
| Id | Markevich2004_MAPK_orderedMM2kinases |
| Name | Markevich2004_MAPK_orderedMM2kinases |
| Number of Floating Species: | 6 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000032.xml |
| Id | kofahl_pheromone_pathway |
| Name | Kofahl2004_pheromone |
| Number of Floating Species: | 36 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000033.xml |
| Id | Brown2004_NGF_EGF_signaling |
| Name | Brown2004_NGF_EGF_signaling |
| Number of Floating Species: | 32 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000034.xml |
| Id | model_0000001 |
| Name | Smolen2004_CircClock |
| Number of Floating Species: | 9 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim |
Concentration Plot
Difference Plot
BIOMD0000000035.xml |
| Id | vilarOscillator |
| Name | Vilar2002_Oscillator |
| Number of Floating Species: | 9 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000036.xml |
| Id | Tyson1999 |
| Name | Tyson1999_CircClock |
| Number of Floating Species: | 2 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000037.xml |
| Id | Marwan_Genetics_2003 |
| Name | Marwan_Genetics_2003 |
| Number of Floating Species: | 11 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000038.xml |
| Id | Rohwer2000_Phosphotransferase_System |
| Name | Rohwer2000_Phosphotransferase_System |
| Number of Floating Species: | 13 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000039.xml |
| Id | Marhl_Calcium_Oscillations_role_of_mitochondria_and_cytosolic_proteins |
| Name | Marhl2000_CaOscillations |
| Number of Floating Species: | 5 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000040.xml |
| Id | Field1974_Oregonator |
| Name | Field1974_Oregonator |
| Number of Floating Species: | 3 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000041.xml |
| Id | Kongas___Van_Beek |
| Name | Kongas2001_creatine |
| Number of Floating Species: | 10 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000042.xml |
| Id | Glycolysis_Nielsen |
| Name | Nielsen1998_Glycolysis |
| Number of Floating Species: | 15 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000043.xml |
| Id | Goldbeter_Calcium_Oscillation_based_on_CICR_AND_CA_channel_inhibition |
| Name | Borghans1997_CaOscillation_model1 |
| Number of Floating Species: | 5 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000044.xml |
| Id | Goldbeter_Calcium_Oscillation_based_on_CICR_AND_CA_Activated_degradation_of_IP3 |
| Name | Borghans1997_CaOscillation_model2 |
| Number of Floating Species: | 7 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000045.xml |
| Id | Goldbeter_Calcium_Oscillation_based_onCICR_AND_two_pool_model |
| Name | Borghans1997_CaOscillation_model3 |
| Number of Floating Species: | 4 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000046.xml |
| Id | Olsen2003_peroxidase |
| Name | Olsen2003_peroxidase |
| Number of Floating Species: | 12 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000047.xml |
| Id | Oxhamre_Bacteria_induced_Ca_oscillations |
| Name | Oxhamre2005_Ca_oscillation |
| Number of Floating Species: | 2 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000048.xml |
| Id | Kholodenko1999_EGFRsignaling |
| Name | Kholodenko1999_EGFRsignaling |
| Number of Floating Species: | 23 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000049.xml |
| Id | untitled |
| Name | Sasagawa2005_MAPK |
| Number of Floating Species: | 94 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000050.xml |
| Id | Kinetic_modelling_of_Amadori_degradation |
| Name | Martins2003_AmadoriDegradation |
| Number of Floating Species: | 14 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac MathSBML Oscill8 Core SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000051.xml |
| Id | Chassagnole2002_Carbon_Metabolism |
| Name | Chassagnole2002_Carbon_Metabolism |
| Number of Floating Species: | 18 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000052.xml |
| Id | Brands2002_MonosaccharideCasein |
| Name | Brands2002_MonosaccharideCasein |
| Number of Floating Species: | 11 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000053.xml |
| Id | Ferreira_CML_generation |
| Name | Ferreira2003_CML_generation2 |
| Number of Floating Species: | 6 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000054.xml |
| Id | Ataullahkhanov1996_Adenylate |
| Name | Ataullahkhanov1996_Adenylate |
| Number of Floating Species: | 3 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000055.xml |
| Id | Locke2005_CircadianClock |
| Name | Locke2005_CircClock |
| Number of Floating Species: | 13 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000056.xml |
| Id | Chen2004_CellCycle |
| Name | Chen2004_CellCycle |
| Number of Floating Species: | 54 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML |
Concentration Plot
Difference Plot
BIOMD0000000057.xml |
| Id | Sneyd2002_dynamic_model_of_IP3_Receptor |
| Name | Sneyd2002_IP3_Receptor |
| Number of Floating Species: | 6 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000058.xml |
| Id | Bindschadler_Ca_Oscillator |
| Name | Bindschadler2001_coupled_Ca_oscillators |
| Number of Floating Species: | 4 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000059.xml |
| Id | Fridlyand2003_Ca_flux_pancreatic_cells |
| Name | Fridlyand2003_Calcium_flux |
| Number of Floating Species: | 6 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000060.xml |
| Id | Keizer1996_Ryanodine_receptor_adaptation |
| Name | Keizer1996_Ryanodine_receptor_adaptation |
| Number of Floating Species: | 4 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi CVODE roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000061.xml |
| Id | Hynne2001_Glycolysis |
| Name | Hynne2001 Glycolysis |
| Number of Floating Species: | 22 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000062.xml |
| Id | Bhartiya2003_Tryptophan_operon |
| Name | bhartiya2003 tryptophan operon |
| Number of Floating Species: | 3 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000063.xml |
| Id | Galazzo1990_pathway_kinetics |
| Name | Galazzo1990_pathway_kinetics |
| Number of Floating Species: | 5 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000064.xml |
| Id | Teusink2000_Glycolysis |
| Name | Teusink2000_Glycolysis |
| Number of Floating Species: | 14 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000065.xml |
| Id | Yildirim2003_Lac_operon |
| Name | Yildirim2003_Lac_Operon |
| Number of Floating Species: | 8 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000066.xml |
| Id | Chassagnole2001_Threonine_Synthesis |
| Name | Chassagnole2001_Threonine Synthesis |
| Number of Floating Species: | 11 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000067.xml |
| Id | Fung2005_Metabolator |
| Name | Fung2005_Metabolic_Oscillator |
| Number of Floating Species: | 7 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000068.xml |
| Id | Curien2003_MetThr_synthesis |
| Name | Curien2003_MetThr_synthesis |
| Number of Floating Species: | 1 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000069.xml |
| Id | Src_MitoticActivation |
| Name | Fuss2006_MitoticActivation |
| Number of Floating Species: | 10 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000070.xml |
| Id | Holzhutter2004_Erythrocyte_Metabolism |
| Name | Holzhutter2004_Erythrocyte_Metabolism |
| Number of Floating Species: | 40 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000071.xml |
| Id | Bakker2001_Glycolysis |
| Name | Bakker2001_Glycolysis |
| Number of Floating Species: | 14 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac MathSBML SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000072.xml |
| Id | Model_1 |
| Name | Yi2003_GproteinCycle |
| Number of Floating Species: | 7 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000073.xml |
| Id | Model_1 |
| Name | Leloup2003_CircClock_DD |
| Number of Floating Species: | 16 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000074.xml |
| Id | Model_1 |
| Name | Leloup2003_CircClock_DD_REV-ERBalpha |
| Number of Floating Species: | 19 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000075.xml |
| Id | Xu2003_Phosphoinositide_turnover |
| Name | Xu2003_Phosphoinositide_turnover |
| Number of Floating Species: | 10 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000076.xml |
| Id | Cronwright2002_Glycerol_Synthesis |
| Name | Cronwright2002_Glycerol_Synthesis |
| Number of Floating Species: | 1 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000077.xml |
| Id | Model_1 |
| Name | Blum2000_LHsecretion_1 |
| Number of Floating Species: | 8 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000078.xml |
| Id | Model_1 |
| Name | Leloup2003_CircClock_LD |
| Number of Floating Species: | 16 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000079.xml |
| Id | Model_0 |
| Name | Goldbeter2006_weightCycling |
| Number of Floating Species: | 3 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000080.xml |
| Id | Model_1 |
| Name | Thomsen1989_AdenylateCyclase |
| Number of Floating Species: | 10 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000081.xml |
| Id | Suh2004_KCNQ_regulation |
| Name | Suh2004_KCNQ_Regulation |
| Number of Floating Species: | 22 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000082.xml |
| Id | Model_1 |
| Name | Thomsen1988_AdenylateCyclase_Inhibition |
| Number of Floating Species: | 10 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000083.xml |
| Id | Model_1 |
| Name | Leloup2003_CircClock_LD_REV-ERBalpha |
| Number of Floating Species: | 19 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000084.xml |
| Id | Hornberg2005_ERKcascade |
| Name | Hornberg2005_ERKcascade |
| Number of Floating Species: | 8 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi CVODE roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000085.xml |
| Id | Maurya2005 |
| Name | Maurya2005_GTPaseCycle_reducedOrder |
| Number of Floating Species: | 17 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000086.xml |
| Id | Model_0 |
| Name | Bornheimer2004_GTPaseCycle |
| Number of Floating Species: | 17 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000087.xml |
| Id | YeastWTmodel2 |
| Name | Proctor2006_telomere |
| Number of Floating Species: | 54 |
| HasEvents? | YES |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000088.xml |
| Id | Maeda2006_MyosinPhosphorylation |
| Name | Maeda2006_MyosinPhosphorylation |
| Number of Floating Species: | 100 |
| HasEvents? | YES |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000089.xml |
| Id | Locke2006_CircClock_LL |
| Name | Locke2006_CircClock_LL |
| Number of Floating Species: | 16 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000090.xml |
| Id | wolf01 |
| Name | Wolf2001 respiratory oscillations |
| Number of Floating Species: | 13 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000091.xml |
| Id | Proctor2005_Hsp90 |
| Name | Hsp90model_basis510 |
| Number of Floating Species: | 15 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi CVODE roadRunner Jarnac MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000092.xml |
| Id | Fuentes2005_ZymogenActivation |
| Name | Fuentes2005_ZymogenActivation |
| Number of Floating Species: | 4 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000093.xml |
| Id | Yamada2003_JAK_STAT_Pathway |
| Name | Yamada2003_JAK_STAT_pathway |
| Number of Floating Species: | 33 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000094.xml |
| Id | Yamada2003_JAK_STAT_SOCS1_knockout |
| Name | Yamada2003_JAK_STAT_SOCS1_knockout |
| Number of Floating Species: | 33 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000095.xml |
| Id | Zeilinger2006_PRR7_PRR9_Y |
| Name | Zeilinger2006_PRR7-PRR9-Y |
| Number of Floating Species: | 19 |
| HasEvents? | YES |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000096.xml |
| Id | Zeilinger2006_PRR7_PRR9light_Y |
| Name | Zeilinger2006_PRR7-PRR9light-Y |
| Number of Floating Species: | 19 |
| HasEvents? | YES |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000097.xml |
| Id | Zeilinger2006_PRR7_PRR9light_Yprime |
| Name | Zeilinger2006_PRR7-PRR9light-Yprime |
| Number of Floating Species: | 19 |
| HasEvents? | YES |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000098.xml |
| Id | Goldbeter1990_Ca_Oscillations |
| Name | Goldbeter1990_Ca_Oscillations |
| Number of Floating Species: | 2 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000099.xml |
| Id | Model_1 |
| Name | Laub1998_SpontaneousOscillations |
| Number of Floating Species: | 7 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000100.xml |
| Id | Rozi2003_Glycogen_Phosphorylase_Activation |
| Name | Rozi2003_GlycogenPhosphorylase_Activation |
| Number of Floating Species: | 4 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000101.xml |
| Id | Vilar2006_TGFbeta |
| Name | Vilar2006_TGFbeta |
| Number of Floating Species: | 6 |
| HasEvents? | YES |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000102.xml |
| Id | Legewie2006_apoptosis_WT |
| Name | Legewie2006_apoptosis_WT |
| Number of Floating Species: | 13 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000103.xml |
| Id | Legewie2006_apoptosis_NC |
| Name | Legewie2006_apoptosis_NC |
| Number of Floating Species: | 17 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000104.xml |
| Id | Model_0 |
| Name | Klipp2002_MetabolicOptimization_linearPathway(n=2) |
| Number of Floating Species: | 6 |
| HasEvents? | YES |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000105.xml |
| Id | Proctor2007_ubiquitine |
| Name | Proctor2007_ubiquitine |
| Number of Floating Species: | 35 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi CVODE roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000106.xml |
| Id | Yang2007_ArachidonicAcid |
| Name | Yang2007_ArachidonicAcid |
| Number of Floating Species: | 25 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000107.xml |
| Id | Novak1993_M_phase_control |
| Name | Novak1993_M_phase_control |
| Number of Floating Species: | 14 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000108.xml |
| Id | model_0000001 |
| Name | Kowald2006_SOD |
| Number of Floating Species: | 9 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000109.xml |
| Id | Haberichter2007_cellcycle |
| Name | Haberichter2007_cellcycle |
| Number of Floating Species: | 61 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000110.xml |
| Id | model_0000001 |
| Name | Qu2003_CellCycle |
| Number of Floating Species: | 15 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000111.xml |
| Id | Novak2001_FissionYeast_CellCycle |
| Name | Novak2001_FissionYeast_CellCycle |
| Number of Floating Species: | 10 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000112.xml |
| Id | Clarke2006_Smad_signalling |
| Name | Clarke2006_Smad_signalling |
| Number of Floating Species: | 10 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac MathSBML SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000113.xml |
| Id | Dupont1992_Ca_dpt_protein_phospho |
| Name | Dupont1992_Ca_dpt_protein_phospho |
| Number of Floating Species: | 4 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000114.xml |
| Id | model_0000001 |
| Name | Somogyi1990_CaOscillations |
| Number of Floating Species: | 2 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000115.xml |
| Id | model_0000001 |
| Name | Somogyi1990_CaOscillations_SingleCaSpike |
| Number of Floating Species: | 2 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000116.xml |
| Id | Model_0 |
| Name | McClean2007_CrossTalk |
| Number of Floating Species: | 6 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000117.xml |
| Id | model_0000001 |
| Name | Dupont1991_CaOscillation |
| Number of Floating Species: | 2 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000118.xml |
| Id | model_0000001 |
| Name | Golomb2006_SomaticBursting |
| Number of Floating Species: | 0 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000119.xml |
| Id | model_0000001 |
| Name | Golomb2006_SomaticBursting_nonzero[Ca] |
| Number of Floating Species: | 1 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000120.xml |
| Id | Chan2004_TCell_receptor_activation |
| Name | Chan2004_TCell_receptor_activation |
| Number of Floating Species: | 5 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000121.xml |
| Id | model_0000001 |
| Name | Clancy2001_Kchannel |
| Number of Floating Species: | 6 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000122.xml |
| Id | Fisher2006_Ca_Oscillation_dpdnt_NFAT_dynamics |
| Name | Fisher2006_Ca_Oscillation_dpdnt_NFAT_dynamics |
| Number of Floating Species: | 12 |
| HasEvents? | YES |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000123.xml |
| Id | Fisher2006_NFAT_Activation |
| Name | Fisher2006_NFAT_Activation |
| Number of Floating Species: | 14 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000124.xml |
| Id | model_0000001 |
| Name | Wu2006_K+Channel |
| Number of Floating Species: | 2 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000125.xml |
| Id | model_0000001 |
| Name | Komarova2005_TheoreticalFramework_BasicArchitecture |
| Number of Floating Species: | 5 |
| HasEvents? | YES |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000126.xml |
| Id | model_0000001 |
| Name | Clancy2002_CardiacSodiumChannel_WT |
| Number of Floating Species: | 9 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000127.xml |
| Id | model_0000001 |
| Name | Izhikevich2003_SpikingNeuron |
| Number of Floating Species: | 0 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000128.xml |
| Id | model_0000001 |
| Name | Bertram2006_Endothelin |
| Number of Floating Species: | 3 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000129.xml |
| Id | model_0000001 |
| Name | Izhikevich2004_SpikingNeurons_inhibitionInducedSpiking |
| Number of Floating Species: | 0 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000130.xml |
| Id | model_0000001 |
| Name | Izhikevich2004_SpikingNeurons_integrator |
| Number of Floating Species: | 0 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000131.xml |
| Id | model_0000001 |
| Name | Izhikevich2004_SpikingNeurons_reboundBurst |
| Number of Floating Species: | 0 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000132.xml |
| Id | model_0000001 |
| Name | Izhikevich2004_SpikingNeurons_reboundSpike |
| Number of Floating Species: | 0 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000133.xml |
| Id | model_0000001 |
| Name | Izhikevich2004_SpikingNeurons_resonator |
| Number of Floating Species: | 0 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000134.xml |
| Id | model_0000001 |
| Name | Izhikevich2004_SpikingNeurons_SpikeLatency |
| Number of Floating Species: | 0 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000135.xml |
| Id | model_0000001 |
| Name | Izhikevich2004_SpikingNeurons_subthresholdOscillations |
| Number of Floating Species: | 0 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000136.xml |
| Id | model_0000001 |
| Name | Izhikevich2004_SpikingNeurons_thresholdVariability |
| Number of Floating Species: | 0 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000137.xml |
| Id | Sedaghat2002_InsulinSignalling_noFeedback |
| Name | Sedaghat2002_InsulinSignalling_noFeedback |
| Number of Floating Species: | 21 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000138.xml |
| Id | model_0000001 |
| Name | Tabak2007_dopamine |
| Number of Floating Species: | 1 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000139.xml |
| Id | Hoffmann2002_KnockOut_IkBNFkB_Signaling |
| Name | Hoffmann2002_KnockOut_IkBNFkB_Signaling |
| Number of Floating Species: | 24 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000140.xml |
| Id | Hoffmann2002_WT_IkBNFkB_Signaling |
| Name | Hoffmann2002_WT_IkBNFkB_Signaling |
| Number of Floating Species: | 24 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000141.xml |
| Id | model_0000001 |
| Name | Izhikevich2004_SpikingNeurons_Class1Excitable |
| Number of Floating Species: | 0 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000142.xml |
| Id | model_0000001 |
| Name | Izhikevich2004_SpikingNeurons_Class2Excitable |
| Number of Floating Species: | 0 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000143.xml |
| Id | Olsen2003_neutrophil_oscillatory_metabolism |
| Name | Olsen2003_neutrophil_oscillatory_metabolism |
| Number of Floating Species: | 20 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000144.xml |
| Id | Model_generated_by_BIOCHAM |
| Name | Calzone2007_CellCycle |
| Number of Floating Species: | 17 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000145.xml |
| Id | Wang2007_ATP_induced_Ca_Oscillation |
| Name | Wang2007_ATP_induced_Ca_Oscillation |
| Number of Floating Species: | 7 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000146.xml |
| Id | model_0000001 |
| Name | Hatakeyama2003_MAPK |
| Number of Floating Species: | 33 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000147.xml |
| Id | ODea2007_IkappaB |
| Name | ODea2007_IkappaB |
| Number of Floating Species: | 24 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000148.xml |
| Id | Komarova2003_BoneRemodeling |
| Name | Komarova2003_BoneRemodeling |
| Number of Floating Species: | 7 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000149.xml |
| Id | Kim2007_Wnt_ERK_Crosstalk |
| Name | Kim2007_Wnt_ERK_Crosstalk |
| Number of Floating Species: | 28 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000150.xml |
| Id | Morris2002_CellCycle_CDK2Cyclin |
| Name | Morris2002_CellCycle_CDK2Cyclin |
| Number of Floating Species: | 4 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000151.xml |
| Id | Singh2006_IL6_Signal_Transduction |
| Name | Singh2006_IL6_Signal_Transduction |
| Number of Floating Species: | 66 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
