BIOMD0000000001.xml |
| Id | EPSP_Edelstein |
| Name | Edelstein1996_EPSP_AChEvent |
| Number of Floating Species: | 12 |
| HasEvents? | YES |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML Oscill8 Core SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000002.xml |
| Id | mod |
| Name | Edelstein1996_EPSP_AChSpecies |
| Number of Floating Species: | 13 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000003.xml |
| Id | GMO |
| Name | Goldbeter1991_MinMitOscil |
| Number of Floating Species: | 3 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000004.xml |
| Id | GMO |
| Name | Goldbeter1991_MinMitOscil_ExplInact |
| Number of Floating Species: | 5 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000005.xml |
| Id | Tyson1991CellModel_6 |
| Name | Tyson1991_CellCycle_6var |
| Number of Floating Species: | 6 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac MathSBML Oscill8 Core SBToolbox2 |
Concentration Plot
Difference Plot
BIOMD0000000006.xml |
| Id | Tyson1991CellModel_2 |
| Name | Tyson1991_CellCycle_2var |
| Number of Floating Species: | 2 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi CVODE roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000007.xml |
| Id | NovakTyson1997CellModel |
| Name | Novak1997_CellCycle |
| Number of Floating Species: | 17 |
| HasEvents? | YES |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner MathSBML SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000008.xml |
| Id | Gardner1998_CellCycle_Goldbeter |
| Name | Gardner1998_CellCycle_Goldbeter |
| Number of Floating Species: | 5 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000009.xml |
| Id | Huang1996_MAPK_ultrasens |
| Name | Huang1996_MAPK_ultrasens |
| Number of Floating Species: | 22 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000010.xml |
| Id | Kholodenko2000_MAPK_feedback |
| Name | Kholodenko2000_MAPK_feedback |
| Number of Floating Species: | 8 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000011.xml |
| Id | MAPK_in_Solution |
| Name | Levchenko2000_MAPK_noScaffold |
| Number of Floating Species: | 22 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi CVODE roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000012.xml |
| Id | repressilator |
| Name | Elowitz2000_Repressilator |
| Number of Floating Species: | 6 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000013.xml |
| Id | untitled |
| Name | Poolman2004_CalvinCycle |
| Number of Floating Species: | 18 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi CVODE roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 |
Concentration Plot
Difference Plot
BIOMD0000000014.xml |
| Id | MAPK_in_Scaffold |
| Name | Levchenko2000_MAPK_Scaffold |
| Number of Floating Species: | 86 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi CVODE roadRunner Jarnac jsim MathSBML SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000015.xml |
| Id | Curto |
| Name | Curto1998_purineMetabol |
| Number of Floating Species: | 16 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000016.xml |
| Id | Goldbeter1995 |
| Name | Goldbeter1995_CircClock |
| Number of Floating Species: | 6 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000017.xml |
| Id | Hoefnagel2002_PyruvateBranches |
| Name | Hoefnagel2002_PyruvateBranches |
| Number of Floating Species: | 12 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi CVODE roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000018.xml |
| Id | MorrisonAllegra |
| Name | Morrison1989_FolateCycle |
| Number of Floating Species: | 20 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000020.xml |
| Id | hhsa_1952 |
| Name | hodgkin-huxley squid-axon 1952 |
| Number of Floating Species: | 0 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner SBToolbox2 |
Concentration Plot
Difference Plot
BIOMD0000000021.xml |
| Id | Leloup1999_CircClock_periodic |
| Name | Leloup1999_CircClock |
| Number of Floating Species: | 10 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000022.xml |
| Id | Ueda2001_CircClock |
| Name | Ueda2001_CircClock |
| Number of Floating Species: | 10 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000023.xml |
| Id | Rohwer2001_Sucrose |
| Name | Rohwer2001_Sucrose |
| Number of Floating Species: | 5 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000024.xml |
| Id | Scheper1999 |
| Name | Scheper1999_CircClock |
| Number of Floating Species: | 2 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim Oscill8 Core |
Concentration Plot
Difference Plot
BIOMD0000000025.xml |
| Id | Smolen2002 |
| Name | Smolen2002_CircClock |
| Number of Floating Species: | 3 |
| HasEvents? | YES |
| HasRules? | NO |
| Simulators delivering results: | BioUML copasi roadRunner |
Concentration Plot
Difference Plot
BIOMD0000000026.xml |
| Id | Markevich2004_MAPK_orderedelementary |
| Name | Markevich2004_MAPK_orderedElementary |
| Number of Floating Species: | 11 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000027.xml |
| Id | Markevich2004_MAPK_orderedMM |
| Name | Markevich2004_MAPK_orderedMM |
| Number of Floating Species: | 5 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000028.xml |
| Id | model_0000001 |
| Name | Markevich2004_MAPK_phosphoRandomElementary |
| Number of Floating Species: | 16 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000029.xml |
| Id | model_0000001 |
| Name | Markevich2004_MAPK_phosphoRandomMM |
| Number of Floating Species: | 6 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000030.xml |
| Id | model_0000001 |
| Name | Markevich2005_MAPK_AllRandomElementary |
| Number of Floating Species: | 18 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000031.xml |
| Id | Markevich2004_MAPK_orderedMM2kinases |
| Name | Markevich2004_MAPK_orderedMM2kinases |
| Number of Floating Species: | 6 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000032.xml |
| Id | kofahl_pheromone_pathway |
| Name | Kofahl2004_pheromone |
| Number of Floating Species: | 36 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000033.xml |
| Id | Brown2004_NGF_EGF_signaling |
| Name | Brown2004_NGF_EGF_signaling |
| Number of Floating Species: | 32 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000034.xml |
| Id | model_0000001 |
| Name | Smolen2004_CircClock |
| Number of Floating Species: | 9 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim |
Concentration Plot
Difference Plot
BIOMD0000000035.xml |
| Id | vilarOscillator |
| Name | Vilar2002_Oscillator |
| Number of Floating Species: | 9 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000036.xml |
| Id | Tyson1999 |
| Name | Tyson1999_CircClock |
| Number of Floating Species: | 2 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000037.xml |
| Id | Marwan_Genetics_2003 |
| Name | Marwan_Genetics_2003 |
| Number of Floating Species: | 11 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000038.xml |
| Id | Rohwer2000_Phosphotransferase_System |
| Name | Rohwer2000_Phosphotransferase_System |
| Number of Floating Species: | 13 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000039.xml |
| Id | Marhl_Calcium_Oscillations_role_of_mitochondria_and_cytosolic_proteins |
| Name | Marhl2000_CaOscillations |
| Number of Floating Species: | 5 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000040.xml |
| Id | Field1974_Oregonator |
| Name | Field1974_Oregonator |
| Number of Floating Species: | 3 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000041.xml |
| Id | Kongas___Van_Beek |
| Name | Kongas2001_creatine |
| Number of Floating Species: | 10 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000042.xml |
| Id | Glycolysis_Nielsen |
| Name | Nielsen1998_Glycolysis |
| Number of Floating Species: | 15 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000043.xml |
| Id | Goldbeter_Calcium_Oscillation_based_on_CICR_AND_CA_channel_inhibition |
| Name | Borghans1997_CaOscillation_model1 |
| Number of Floating Species: | 5 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000044.xml |
| Id | Goldbeter_Calcium_Oscillation_based_on_CICR_AND_CA_Activated_degradation_of_IP3 |
| Name | Borghans1997_CaOscillation_model2 |
| Number of Floating Species: | 7 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000045.xml |
| Id | Goldbeter_Calcium_Oscillation_based_onCICR_AND_two_pool_model |
| Name | Borghans1997_CaOscillation_model3 |
| Number of Floating Species: | 4 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000046.xml |
| Id | Olsen2003_peroxidase |
| Name | Olsen2003_peroxidase |
| Number of Floating Species: | 12 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000047.xml |
| Id | Oxhamre_Bacteria_induced_Ca_oscillations |
| Name | Oxhamre2005_Ca_oscillation |
| Number of Floating Species: | 2 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver |
Concentration Plot
Difference Plot
BIOMD0000000048.xml |
| Id | Kholodenko1999_EGFRsignaling |
| Name | Kholodenko1999_EGFRsignaling |
| Number of Floating Species: | 23 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000049.xml |
| Id | untitled |
| Name | Sasagawa2005_MAPK |
| Number of Floating Species: | 94 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000050.xml |
| Id | Kinetic_modelling_of_Amadori_degradation |
| Name | Martins2003_AmadoriDegradation |
| Number of Floating Species: | 14 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac MathSBML Oscill8 Core SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000051.xml |
| Id | Chassagnole2002_Carbon_Metabolism |
| Name | Chassagnole2002_Carbon_Metabolism |
| Number of Floating Species: | 18 |
| HasEvents? | NO |
| HasRules? | YES |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac MathSBML Oscill8 Core SBToolbox2 SBWOdeSolver VCell |
Concentration Plot
Difference Plot
BIOMD0000000052.xml |
| Id | Brands2002_MonosaccharideCasein |
| Name | Brands2002_MonosaccharideCasein |
| Number of Floating Species: | 11 |
| HasEvents? | NO |
| HasRules? | NO |
| Simulators delivering results: | BioUML ByoDyn copasi roadRunner Jarnac jsim MathSBML Oscill8 Core SBWOdeSolver VCell |
